Database Mining of the Human Genome
Molecular databases include four representative implementations:
- European Molecular Biology Laboratory Nucleotide Sequence Data Library (EMBL). http://www.embl-heidelberg.de/
- DNA Database of Japan (DDBJ). http://www.ddbj.nig.ac.jp/
- Genbank. http://www.ncbi.nlm.nih.gov/Genbank/GenbankSearch.aspx
- Swiss-Prot. http://www.expasy.ch/sprot/sprot-top.aspx
Genetic databases include two representative implementations:
- Genome Database (GDB). http://www.gdb.org/
- Online Mendelian Inheritance in Man (OMIM). http://www3.ncbi.nlm.nih.gov/Omim/
DNA analysis: computational algorithms:
- Aat. http://genome.cs.mtu.edu/aat.aspx
- Banbury Cross. http://igs-server.cnrs-mrs.fr/igs/banbury/
- GeneParser. http://beagle.colorado.edu/
- Genie. http://www.fruitfly.org/seq_tools/genie.aspx
- Genscan. http://genes.mit.edu/GENSCAN.aspx
- GenViewer. http://www.itba.mi.cnr.it/webgene/
- Grail. http://compbio.ornl.gov/Grail-1.3/
- Mzef. http://www.cshl.org/genefinder/
- ORFgene. http://www.itba.mi.cnr.it/webgene/
- Sorfind. http://www.rabbithutch.com
- Xgrail. http://www.hgmp.embnet.org/
Human gene expression databases include eight representative implementations:
- dbEST. http://www.ncbi.nlm.nih.gov/dbEST/index.aspx
- GeneCards. http://bioinformatics.weizmann.ac.il/cards/
- Globin Gene Server. http://globin.cse.psu.edu
- Human Developmental Anatomy. http://www.ana.ed.ac.uk/anatomy/database/humat/
- Kidney Development Database. http://golgi.ana.ed.ac.uk/kidhome.aspx
- Tooth Gene Expression Database. http://bite-it.helsinki.fi/
Human proteome databases include eleven representative implementations:
- FindMod Tool. http://www.expasy.ch/tools/findmod
- Heart High-Performance 2-D Database. http://www.mdc-berlin.de/~emu/heart/
- HEART-2-D PAGE. http://userpage.chemie.fu-berlin.de/~pleiss/dhzb.aspx
- Human 2-D Page Databases. http://proteomics.cancer.dk/
- NCI 2DWG Image Meta-Database. http://www-lecb.ncifcrf.gov/2dwgDB/
- SWISS-2-D PAGE. http://www.expasy.ch/ch2d/
- WORLD-2-D PAGE. http://www.expasy.ch/ch2d/2d-index.aspx